Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs79718155 | chr11:26693049 | A/C | 0.000299 | 486 | 15.7 | 16.62 | 9 | KM Plot |
| THCA | rs79721522 | chr2:48062237 | A/G | 1.14E-7 | 487 | 15.3 | 17.93 | 8.27 | KM Plot |
| THCA | rs79737541 | chr6:24432091 | G/T | 6.2E-7 | 479 | 16.33 | 14.9 | 9.25 | KM Plot |
| THCA | rs79747846 | chr6:24403196 | T/C | 2.22E-16 | 485 | 16.33 | 14.9 | 9.25 | KM Plot |
| THCA | rs79760025 | chr16:2944486 | G/C | 0.000162 | 485 | 15.2 | 17.13 | 15.4 | KM Plot |
| THCA | rs79781870 | chr5:96232700 | T/C | 3.27E-6 | 489 | 15.83 | 16.92 | 17.7 | KM Plot |
| THCA | rs79785019 | chr5:6385254 | T/C | 8.87E-5 | 481 | 16.23 | 14.42 | 25 | KM Plot |
| THCA | rs79792035 | chr8:144565798 | G/C | 3.04E-9 | 479 | 16.67 | 14.77 | 12.67 | KM Plot |
| THCA | rs79793035 | chr3:56659238 | C/T | 3.92E-6 | 487 | 16.87 | 12.6 | 8.47 | KM Plot |
| THCA | rs79853351 | chr2:48079978 | T/C | 9.89E-8 | 486 | 15.3 | 18.33 | 8.27 | KM Plot |
| THCA | rs79868973 | chr6:26189312 | C/G | 2.38E-8 | 485 | 15.63 | 16.8 | 6.67 | KM Plot |
| THCA | rs79869391 | chr14:59740164 | A/G | 1.41E-8 | 489 | 16.4 | 12.62 | 5.45 | KM Plot |
| THCA | rs79889018 | chr11:62610807 | C/G | 7.89E-5 | 490 | 16.23 | 14.17 | 14.27 | KM Plot |
| THCA | rs79890110 | chr1:91845072 | C/T | 7.89E-6 | 489 | 15.67 | 17.03 | 17.77 | KM Plot |
| THCA | rs79903895 | chr2:48104146 | T/C | 5.27E-8 | 488 | 15.17 | 19.47 | 8.27 | KM Plot |